| Genes | Primers | Nucleotides sequence | Fragments size (bp) 5' to 3' | References | |
| 23S rRNA | Staur4 Staur6 | ACG GAG TTA CAA AGG ACG AC AGC TCA GCC TTA ACG AGT AC | 1250 | Straub et al., 1999 | |
| nuc | nucF nucR | GCGATTGATGGTGATACGGT AGCCAAGCCTTGACGAACTAAAGC | 280 | Brakstad et al., 1992 | |
| Multiplex I | sea | sea-1 sea-2 | GAA AAA AGT CTG AAT TGC AGG GAA CA CAA ATA AAT CGT AAT TAA CCG AAG GTT C | 560 | Jarraud et al., 2002 |
| seh | seh-1 she-2 | CAA TCA CAT CAT ATG CGA AAG CAG CAT CTA CCC AAA CAT TAG CAC C | 376 | Jarraud et al., 2002 | |
| sec | sec-1 sec-2 | CTT GTA TGT ATG GAG GAA TAA CAA AAC ATG CAT ATC ATA CCA AAA AGT ATT GCC GT | 275 | Jarraud et al., 2002 | |
| tst | tst-1 tst-2 | TTC ACT ATT TGT AAA AGT GTC AGA CCC ACT TAC TAA TGA ATT TTT TTA TCG TAA GCC CTT | 180 | Jarraud et al., 2002 | |
| Multiplex II | sed | sed-1 sed-2 | GAA TTA AGT AGT ACC GCG CTA AAT AAT ATG GCT GTA TTT TTC CTC CGA GAG T | 492 | Jarraud et al., 2002 |
| etd | etd-1 etd-2 | CAA ACT ATC ATG TAT CAA GGA TGG CCA GAA TTT CCC GAC TCA G | 358 | Zhang et al., 1998 | |
| eta | eta-1 eta-2 | ACT GTA GGA GCT AGT GCA TTT GT TGG ATA CTT TTG TCT ATC TTT TTC ATC AAC | 190 | Jarraud et al., 2002 | |
| selk | sek-1 sek-2 sek-3 | ATG CCA GCG CTC AAG GC AGA TTC ATT TGA AAA TTG TAG TTG ATT AGC T TGC CAG CGC TCA AGG TG | 134 | Holtfreter et al., 2007 | |
| Multiplex III | see | see-1 see-2 | CAA AGA AAT GCT TTA AGC AAT CTT AGG C CAC CTT ACC GCC AAA GCT G | 482 | Jarraud et al., 2002 |
| seb | seb-1 seb-2 | ATT CTA TTA AGG ACA CTA AGT TAG GGA ATC CCG TTT CAT AAG GCG AGT | 404 | Jarraud et al., 2002 | |
| selm | sem-1 sem-2 | CTA TTA ATC TTT GGG TTA ATG GAG AAC TTC AGT TTC GAC AGT TTT GTT GTC AT | 326 | Jarraud et al., 2002 | |
| sell | sel-1 sel-2 | GCG ATG TAG GTC CAG GAA AC CAT ATA TAG TAC GAG AGT TAG AAC CAT A | 234 | Holtfreter et al., 2007 | |
| selo | seo-1 seo-2 | AGT TTG TGT AAG AAG TCA AGT GTA GA ATC TTT AAA TTC AGC AGA TAT TCC ATC TAA C | 180 | Jarraud et al., 2002 | |
| Multiplex IV | seln | sen-1 sen-2 | CGT GGC AAT TAG ACG AGT C GAT TGA TYT TGA TGA TTA TKA G | 474 | Holtfreter et al., 2007 |
| seg | seg-1 seg-2 | TCT CCA CCT GTT GAA GG AAG TGA TTG TCT ATT GTC G | 323 | Holtfreter et al., 2007 | |
| selq | seq-1 seq-2 | ACC TGA AAA GCT TCA AGG A CGC CAA CGT AAT TCC AC | 204 | Holtfreter et al., 2007 | |
| selj | sej-1 sej-2 | TCA GAA CTG TTG TTC CGC TAG GAA TTT TAC CAY CAA AGG TAC | 138 | Holtfreter et al., 2007 | |
| Multiplex V | sei | sei-1 sei-2 | CTY GAA TTT TCA ACM GGT AC AGG CAG TCC ATC TCC TG | 461 | Holtfreter et al., 2007 |
| ser | ser-1 ser-2 | AGC GGT AAT AGC AGA AAA TG TCT TGT ACC GTA ACC GTT TT | 363 | Holtfreter et al., 2007 | |
| selu | seu-1 seu-2 | AAT GGC TCT AAA ATT GAT GG ATT TGA TTT CCA TCA TGC TC | 215
| Holtfreter et al., 2007 | |
| selp | sep-1 sep-2 | GAA TTG CAG GGA ACT GCT GGC GGT GTC TTT TGA AC | 182
| Holtfreter et al., 2007 | |