Name

Meaning

Symbol

numprots

Peptide-MHC ligands

on infected cell surface.

keysize

Number Upreg. Coarse

Cubes for infected cell.

ActiveTcellPer

fraction of T cell clones

able to recognize ligand

WNV_size

num. flavivirus peptides

in T cell config.

ActiveTcell_size

number.

virals

num. viral peptides.

.

recog_percent

ratio.

IFN_gam_nbhd

frac. uninfected cells in

IFN- upreg.

neighborhood recog.

HC_recog_prob

product.

HCFraction

if

denom. not zero, else