| Variable | Description |
| y0 | Virus level |
| y1 | Uninfected cells |
| y2 | FIC0: infected resting cells |
| y3 | FIC1: infected dividing cells |
| y4 | T cell population |
| y5 | New infections population |
| y6 | New FIC0 cells |
| y7 | New FIC1 cells |
| y8 | New virus from FIC0 lysis |
| y9 | New virus from FIC1 lysis |
| y10 | New recognized FIC0, FIC1 |
| y12 | FIC0 upregulated at time step |
| y13 | FIC1 upregulated at time step |
| y14 | Uninfected cells killed at time step |