rs3737549

GC

4

72631668

G

A

0.208

0.219

Haploview Tagger

rs3737549

650Y

rs3755967

GC

4

72609398

C

T

0.094

0.04

Haploview Tagger

rs3755967

Sequenom

In complete LD with rs2282679 (Wang et al. 2010)

rs3782905

VDR

12

48266167

G

C

0.217

PharmGKB

rs3782905

Sequenom

Failed Sequenom

rs3819545

VDR

12

48265006

A

G

0.302

0.221

Haploview Tagger

rs3819545

650Y

rs41400444

RXRA

9

137231651

G

T

0.075

0.098

Haploview Tagger

No snps in LD

Failed Sequenom assay design

rs4364228

GC

4

72623347

A

G

0.396

0.468

Haploview Tagger

rs4364228

650Y

rs4646536

CYP27B1

12

58157988

A

G

0.368

0.27

Haploview Tagger

rs703842

0.876

650Y

LD with SNP on original list

rs4646537

CYP27B1

12

58157281

T

G

0.075

0.097

Haploview Tagger

rs4646537

650Y

rs4917352

RXRA

9

137232030

T

C

0.528

0.58

Haploview Tagger

rs4917352

Sequenom

rs4917354

RXRA

9

137237661

C

T

0.453

0.5

Haploview Tagger

rs4917354

650Y

rs6817912

GC

4

72653705

C

T

0.094

0.121

Haploview Tagger

rs6817912

Sequenom

rs7039190

RXRA

9

137266704

A

C

0.104

0.17

Haploview Tagger

rs7039190

650Y

rs7041

GC

4

72618334

A

C

0.179

0.088

Haploview Tagger

rs7041

650Y

Ahn et al. 2010

rs7048602

RXRA

9

137253447

G

A

0.387

0.527

Haploview Tagger

rs7048602

Sequenom

rs705117

GC

4

72608115

C

T

0.298

0.155

Haploview Tagger

rs705117

650Y

rs705119

GC

4

72613036

A

C

0.179

0.097

Haploview Tagger

rs705119

Sequenom

rs705120

GC

4

72614140

A

C

0.547

0.496

Haploview Tagger

rs705120

Sequenom

rs731236

VDR

12

48238757

A

G

0.236

0.288

PharmGKB

rs731236

Sequenom

TaqI

rs739837

VDR

12

48238221

G

T

0.557

0.588

Haploview Tagger

rs739837

650Y

rs757343

VDR

12

48239675

C

T

0.113

0.062

Haploview Tagger

rs757343

650Y

rs7853934

RXRA

9

137252760

C

T

0.292

0.288

Haploview Tagger

rs7853934

Sequenom

rs7855881

RXRA

9

137220543

G

T

0.179

0.221

Haploview Tagger

rs7855881

Sequenom

rs7954412

VDR

12

48237287

T

C

0.085

0.071

Haploview Tagger

rs7967673

1

650Y

LD with SNP on original list

rs7962898

VDR

12

48242837

C

T

0.34

0.336

Haploview Tagger

rs7962898

Sequenom

rs7965281

VDR

12

48231610

A

G

0.358

0.385

Haploview Tagger

rs7965281

Sequenom

rs7967152

VDR

12

48244184

A

C

0.623

0.615

Haploview Tagger

rs7967152

650Y