rs1352841

GC

4

72605170

T

C

0.16

0.124

Haploview Tagger

rs1352841

Sequenom

rs1352844

GC

4

72647749

C

T

0.113

0.125

Haploview Tagger

rs1352844

650Y

rs1352845

GC

4

72647762

A

G

0.34

0.403

Haploview Tagger

rs2298849

1

650Y

LD with SNP on original list

rs1491709

GC

4

72613566

G

A

0.075

0.08

Haploview Tagger

rs1491709

650Y

rs1491710

GC

4

72609094

A

C

0.415

0.433

Haploview Tagger

rs1491710

Sequenom

rs1491711

GC

4

72602252

C

G

0.358

0.354

Haploview Tagger

rs1491711

Sequenom

rs1540339

VDR

12

48257326

C

T

0.245

0.204

PharmGKB

rs1540339

650Y

rs1544410

VDR

12

48239835

C

T

0.217

0.279

PharmGKB

rs1544410

650Y

BsmI

rs16847024

GC

4

72650679

C

T

0.066

0.102

Haploview Tagger

rs16847024

Sequenom

rs1873590

GC

4

72653480

A

G

0.142

0.15

Haploview Tagger

rs1873590

Sequenom

rs188812

GC

4

72627684

A

T

0.189

0.137

Haploview Tagger

rs188812

Sequenom

rs2107301

VDR

12

48255570

G

A

0.179

0.137

Haploview Tagger

rs2107301

650Y

rs2189480

VDR

12

48263828

G

T

0.387

0.389

Haploview Tagger

rs2189480

650Y

rs222014

GC

4

72632931

C

T

0.066

0.064

Haploview Tagger

rs222014

650Y

rs222016

GC

4

72634975

G

A

0.462

0.389

Haploview Tagger

rs222016

650Y

rs222047

GC

4

72610208

C

A

0.802

0.888

Haploview Tagger

rs222047

650Y

rs222049

GC

4

72605955

G

C

0.154

0.177

Haploview Tagger

rs222046

0.869

650Y

LD with SNP on original list

rs2239179

VDR

12

48257766

T

C

0.311

0.292

PharmGKB

rs2239179

650Y

rs2239182

VDR

12

48255411

T

C

0.519

0.611

Haploview Tagger

rs2239182

650Y

rs2239184

VDR

12

48244583

G

A

0.594

0.634

Haploview Tagger

rs2239184

650Y

rs2239185

VDR

12

48244559

G

A

0.542

PharmGKB

rs2239185

Sequenom

rs2248098

VDR

12

48253356

A

G

0.423

0.593

Haploview Tagger

rs2248098

Sequenom

rs2282678

GC

4

72608792

A

G

0.264

0.312

Haploview Tagger

rs16846912 and rs4752

0.959

650Y

LD with SNP on original list

rs2525045

VDR

12

48233020

G

A

0.132

0.168

Haploview Tagger

rs2525045

650Y

rs2853563

VDR

12

48235738

C

T

0.17

0.177

Haploview Tagger

rs2853563

Sequenom

rs34312136

RXRA

9

137269456

Haploview Tagger

rs34312136

Sequenom

rs3733359

GC

4

72649774

G

A

0.217

0.283

Haploview Tagger

rs3733359

650Y, Sequenom

Failed 650Y, passed on sequenom