Motif length

Number

Frequency %

Longest SSR motifs

Genome

Mono

225,883

55.4

(A)294, (T)113, (C)23, (G)24

Di

60,704

14.9

(GT)8605

Tri

28,125

6.9

(TTA)1401

Tetra

2991

0.7

(AAGA)182

Penta

526

0.1

(ATCCA)99

Hexa

362

0.1

(ACACAT)387

Septa

2634

0.6

(GAGCAAG)106

Octa

52,586

12.9

*(AAAAAAAC)4, (ACCACCAC)4, (CCTCACTC)4

Nona

23,500

5.8

(TCTCATCAG)39

Deca

10,180

2.5

(AGTGCTAGGT)4, (CTCTCTCGAA)4

Transcriptome

Mono

4281

27.3

(A)47, (T)43, (G)10

Di

2884

18.4

(AG)25

Tri

4762

30.4

(AGA)16, (ATA)16, (ATG)16, (CAA)16, (TCT)16

Tetra

187

1.2

(AGAA)7, (AGGA)7, (TAGA)7, (TTCT)7, (TTTC)7

Penta

36

0.2

**(AACTC)6, (AGAAG)6, (CTCAA)6

Hexa

47

0.3

(GATGGT)8

Septa

114

0.7

(TCCTTGC)7

Octa

1792

11.4

(CCTCACTC)4, (TTTCTTTT)4

Nona

1303

8.3

***(AATGATGAT)3, (ACACCAAGA)3, (CAACCAAAC)3

Deca

249

1.6

****(AAAAAAAAAC)2, (AAAAAAAAAG)2, (AAAAAAGAAA)2