Probe | Probe sequence (5’à3’) | Targeted species | Fluorescent dye | Reference |
Bac303 | CCA ATG TGG GGG ACC TT | most Bacteroidaceae and Prevotellaceae, some Porphyromonadaceae | Cy5 | Manz et al. [21] |
Bif164 | CAT CCG GCA TTA CCA CCC | Bifidobacterium spp. | Cy3 | Langendijk et al. [22] |
Fprau645 | CCT CTG CAC TAC TCA AGA AAA AC | Fusobacterium prausnitzii and relatives | Cy3 | Suau et al. [23] |
Ebac1790 | CGT GTT TGC ACA GTG CTG | Enterobacteriaceae | Cy5 | Bohnert et al. [24] |
Eub338 | GCT GCC TCC CGT AGG AGT | most Bacteria | FITC | Amann et al. [25] |
NonEub338 | ACT CCT ACG GGA GGC AGC | control probe |
| Wallner et al. [26] |