Viruses

Primer

Sequence(5’-3’)

Position (nt)

Size (bp)

Reference

Norovirus GI

GI-F1M

CTGCCCGAATTYGTAAATGAT

5336-5359

314

[12]

GI-R1M

CCAACCCARCCATTRTACATYTG

5643-5665

GI-F2

ATGATGATGGCGTCTAAGGACGC

5352-5374

Norovirus GII

GII-F1M

GGGAGGGCGATCGCAATCT

5049-5067

313

[12]

GII-R1M

CCRCCIGCATRICCRTTRTACAT

5367-5389

GII-F3M

TTGTGAATGAAGATGGCGTCGART

5077-5100

Astrovirus

Mon340

CGTCATTATTTGTTGTCATACT

1182-1203

289

[13]

Mon348

ACATGTGCTGCTGTTACTATG

1450-1470

Sapovirus

SLV5317

CTCGCCACCTACRAWGCBTGGTT

5083-5105

434

[14]

SLV5749

CGGRCYTCAAAVSTACCBCCCCA

5516-5494

Hepatitis A virus

BR-9b

AGTCACACCTCTCCAGGAAAACTT

2950-2972

361

[15]

BR-5b

TTGTCTGTCACAGAACAATCAG

3310-3333

RJ-3c

TCCCAGAGCTCCATTGAA

2984-3001

234

Br-6b

AGGAGGTGGAAGCACTTCATTTGA

3217-3240