Pipeline

#SNP^†

#FP SNPs

Sensitivity

(%)

Specificity

(%)

Accuracy

#INDEL^§

#FPINDELs

Sensitivity

(%)

Specificity

(%)

Accuracy

(%)

WGS-NA12878D

DRAGEN

2,776,320

2488

99.33

99.72

99.07

330,751

1076

89.66

98.42

88.39

BWA + HC

2,763,565

1433

98.91

99.76

98.68

333,596

457

90.59

98.59

89.45

WGS-NA12878J

DRAGEN

2,779,858

2457

99.46

99.72

99.18

342,883

1799

92.56

98.01

90.85

BWA + HC

2,765,879

1163

99.01

99.77

98.79

339,039

357

92.20

98.51

90.74