Gene

(PCR product size, bp)

Primer name

Primer sequence (5’-3’)

Annealing temp (˚C)

Reference

hupB (645)

hupBF

GGAGGGTTGGGATGAACAAAGCAG

68˚C

[11]

hupBR

GTATCCGTGTGTCTTGACCTATTTG

oxyR (473)

oxyRF

AGCGTCTGGTCGCGTAGGCAGTG

68˚C

[10]

oxyRR

GGTGAAGTAGTCGCCGGGCTGCT

rpoB (235)

rpoBF

TACGGTCGGCGAGCTGATCCAAA

68˚C

[10]

rpoBR

ACAGTCGGCGCTTGTGGGTCAAC

IS6110 (123)

IS6110F

CCTGCGAGCGTAGGCGTCGG

63˚C

[8]

IS6110R

CTCGTCCAGCGCCGCTTCGG

IS1081 (306)

IS1081F

CGACACCGAGCAGCTTCTGGCTG

68˚C

[9]

IS1081R

GTCGGCACCACGCTGGCTAGTG