| Gene (PCR product size, bp) | Primer name | Primer sequence (5’-3’) | Annealing temp (˚C) | Reference |
| hupB (645) | hupBF | GGAGGGTTGGGATGAACAAAGCAG | 68˚C | [11] |
| hupBR | GTATCCGTGTGTCTTGACCTATTTG |
| ||
| oxyR (473) | oxyRF | AGCGTCTGGTCGCGTAGGCAGTG | 68˚C | [10] |
| oxyRR | GGTGAAGTAGTCGCCGGGCTGCT |
| ||
| rpoB (235) | rpoBF | TACGGTCGGCGAGCTGATCCAAA | 68˚C | [10] |
| rpoBR | ACAGTCGGCGCTTGTGGGTCAAC |
| ||
| IS6110 (123) | IS6110F | CCTGCGAGCGTAGGCGTCGG | 63˚C | [8] |
| IS6110R | CTCGTCCAGCGCCGCTTCGG |
| ||
| IS1081 (306) | IS1081F | CGACACCGAGCAGCTTCTGGCTG | 68˚C | [9] |
| IS1081R | GTCGGCACCACGCTGGCTAGTG |
|