| Down-Regulated miRNAs | Predicted Target |
| miR-204 | MEIS1, HOXA10, BCL2, TGFBR1, TGFBR2, SNAI2, Runx2, MEIS2, SNAI1, Mmp9, Aurkb, Hoxb7, SPDEF, THRB, CDX2, CDX2, BCL2L2, BIRC2, EDEM1, EZR, FARP1, FZD1, IL11, M6PR, RAB22A, RAB40B, SERINC3, SERP1, TCF12, TCF4, FOXC1, MAP1LC3B, CREB5, ELOVL6, RUNX2, SOX4, EFNB2, ALPL,SOST,SLC37A3, BPY2, ACSL4, ZNF638, GRIA2, ZCCHC10, TARDBP, AP1S2, RHOBTB1, HELLS, GRIA4, LRIT3, PRAMEF8, JRKL, ACSM2A, CHEK1, PHOX2B, ACSM2B, C2orf68, C9orf72, ENTPD5, CNOT10, MLLT3, MAPRE2, PRAMEF7, ELOVL6, BRWD1, PRO0628, ATP10B, LOC284294, EGR1, NR4A2, FSIP2, NDRG3, HDAC9, C2orf56, SS18, NUDT13, LOC253724, TRMT11, TMEM57, BHLHE22, ZFP91-CNTF, ZFP91-CNTF, SIX1, GATAD1, GPR6, RAP2C, B3GNT5, KIAA0776, PTGR1 |
| miR-125b | BMPR1B, EIF4EBP1, HMGA2, HMGA1, GLI1, NKIRAS2, TP53, SMO, VDR, SGPL1, BAK1, ERBB3, ERBB2, BMF, KLF13, NTRK3, LIN28A, CBFB, AKT1, CYP24A1, RAF1, SMO, PRDM1, IRF4, GRIN2A, CDKN2A, LIN28A, MAP2K7, JUB, KRT7, TNF, TP53INP1, E2F3, TRIM71, IGF2, LIN28B, BAK1, BBC3, BMF, KLF13, TEF, STAT3, BAK1, JUN, JUND, PPP1CA, PPKRA, PRKRA, PPP1CAB, SRF, NKX2-5, PRPF8, BCL2, ETS1, RPS6KA1, TNFAIP3, PIGF, BCL3, TBC1D1, DGAT1, FGFR2, SUV39H1, ARID3B, SMAD4, MCL1, IL6R, STARD13, ABTB1, CBFB, HK2, MMP13, SNAI1, MAPK14, MUC1, NES |
| miR-141 | ZEB2, ZEB1, DLX5, BAP1, Dlx5, Cdh11, Zeb2, Zeb1, Stk3, Klf5, KLF5, STK3, TGFB2,SFPQ, CLOCK, BRD3, UBAP1, PTEN, ZFPM2, TRAPPC2P1, EIF4E, CTBP2, CDYL, ACVR2B,MAPK14, PPARA, NR0B2, YWHAG, Elavl4, MAPK9, TFDP2, E2F3, SHC1, VAC14, TCF7L1, ELMO2, RASSF2, KLHL20, RIN2, SEPT7, HOXB5, ERBB2IP, KLF11, PTPRD, WDR37, AP3S1, RANBP6, ARPC5, WTAP, TAC1, NRP1, ALS2, PITX2, MTF2, SELE, ITGA6, ZFR, IRF2BP2, IRF2BP2, PCDH9, LMO3, KCNIP4, SLC18A2, TRAM1, LHFP, IPO5, YY1, UFM1, C11orf54, LEPR, FAM188A, MYH10, LGR4, ZNF248, HS6ST2, ELAVL2, BBS10, SNRPB2, KIDINS220, ANKS1B, NBPF16, NBPF8, PRKD1, ATL1, GLCCI1, CHD9, TSHZ3, MARCH7, LBR, UNC5C, SP4, MYBL1, NBPF11, MAP2K4 |
| miR-149 | Aicda, AKT1, E2F1, SP1, FOXM1,FRMD7, PPIP5K1, RSBN1L, ERBB3, KIAA1467, C17orf81, BEYLA, CAV2, DYNLRB1, POLR2L,HINFP, EGLN3, MOGAT2, BIRC5, MRPS22, CACHD1, PPAP2B, CCDC109A, RNF2, YJEFN3, NISCH, RUNDC2C, BRPF3, SPEF2, NUCB2, KCNIP1, HSFYL1, CHEK1, SH3GL3, STRADB, TOP1, HSD17B4, NAP1L1, MAGEB18, ZMYM6, STRA6, RAP1BL, RAP1B, ZNF385D, PRDM2, IL6, RAP1A, KCNMA1, HNRNPA1, PHLPP2, UPF2, SSBP1, CCNI, ODZ3, CCDC45 |
| miR-224 | KLK10, CXCR4, CDC4, AP2M1, NIT1, FOSB, NCOA6, API5, EYA4, EDNRA, DIO1, SMAD4, PEBP1 |
| miR-200c | TUBB3, BMI1, SIP1, BAP1, ZEB2, ZEB1, Zeb1, Zeb2, FN1, ZFPM2, UBE2I, JAG1, PTPN13, Flt1, RNF2, RCOR3, BRD7, ACVR2B, Mapk14, MSN, NTRK2, ERRFI1, FHOD1, PPM1F, CCNE2, XIAP, BCL2, TIMP2, FBLN5, VEGFA, NCAM1, Vldlr, Reln, IKBKB, FLT1, KLF9, TBK1, PMAIP1, NTF3, LPAR1, EDNRA, RHOA, KLHL20, PTPRD, ELMO2, ERBB2IP, WDR37, VAC14, TCF7L1, RASSF2, HOXB5, RIN2, KLF11, SEPT7, SHC1, CGRRF1, QKI, WIPF1, LCA5, LOX, ERRFI1, RBM46, LEPR, DNA2, PTPN22, CCNJ, FOXF1, TSGA14, NRG1, SEC23A, RECK, VASH2, KIAA1244, NOG, MARCKS, ASF1A, A2BP1, LHFP, RAP1BL, RAP1B, ZNF423, C9orf93, ZNF532, LRP1B, MEX3B, ELAVL2, APOO, ZDHHC17, INTS8, MSN, NOVA1, CDK17, RAP2C, ZNF292, GPR158, LBR, GPM6A, TFAP2A, KCTD8, WNT16, SULF1, HSPA9, WIF1 |
| miR-200b | PTPN12, ZEB2, BAP1, ZEB1, RERE, Zeb2, Zeb1, ets1, gata4, fn1, wasf3, zfpm2, matr3, rnf2, bml1, ezf3, vegfa, FLT1, KDR, RND3, CCNE2, BCL2, XIAP, SMAD2, CREB1, KLHL20, ELMO2, PTPRD, ERBB21P, WDR37, TCF7L1, VAC14, HOXB5, RIN2, RASSF2, KLF11, SEPT7, SHC1 |