| astD | −2.7 | Down | Succinylglutamic semialdehyde dehydrogenase, response to stress |
| bhsA | −2.6 | Down | Biofilm, cell surface and signaling protein, response to stress |
| ymgC | 2.3 | Up | Biofilm formation, predicted protein |
| yhcN | −2.7 | Down | Cellular response to hydrogen peroxide, periplasmic space |
| ycfR | −2.6 | Down | Periplasmic protein, biofilm formation, response to stress |
| Regulation/cell cycle/cell division | |||
| glnL | 2.1 | Up | Histidine kinase activity, nitrogen regulation protein NR(II) |
| ycfS | −3.5 | Down | Transferase, peptidoglycan synthetase, transcriptional regulator |
| malT | −3.3 | Down | Transcriptional regulator MalT |
| napD | −3.2 | Down | Assembly protein for periplasmic nitrate reductase |
| Metabolism | |||
| astA | −2.1 | Down | Acyltransferase, arginine N-succinyltransferase activity |
| prpR | −2.1 | Down | Regulator for prp operon, propionate catabolism |
| hcaR | −2.0 | Down | DNA-binding transcriptional regulator HcaR |
| LipA | 2.0 | Up | Lipoate synthase, transferase activity |
| CarB | −14.5 | Down | Arginine biosynthetic process, synthase activity |
| putA | −6.6 | Down | Proline dehydrogenase transcription |
| pyrD | −6.2 | Down | Dihydroorotate dehydrogenase/UMP biosynthetic process |
| argH | 4.6 | Up | Argininosuccinate lyase activity |
| poxB | 4.1 | Up | Pyruvate oxidase, thiamine-dependent, FAD-binding |
| hemH | 4.1 | Up | Porphyrin biosynthetic process, ferrochelatase |
| purD | −3.5 | Down | Purine base biosynthetic process, synthase |
| ycfS | −3.5 | Down | Peptidoglycan synthetase activity |
| carA | −3.3 | Down | Glutamine amidotransferase, synthase activity |
| entC | −3.3 | Down | Isochorismate synthase, enterobactin biosynthesis |
| entE | −3.2 | Down | Enterobactin synthase, siderophore biosynthesis |
| pyrB | −3.1 | Down | Aspartate carbamoyltransferase activity |
| leuB | −3.1 | Down | Isopropylmalate dehydrogenase, amino acid synthesis |
| Pyrl | −2.7 | Down | Transferase activity, pyrimidine biosynthesis |
| mdoD | −2.1 | Down | Osmoregulated glucan (OPG) biosynthesis, periplasmic protein |
| alaC | 2.1 | Up | Valine-pyruvate aminotransferase activity |
| yggF | −2.1 | Down | Fructose 1,6 bisphosphatase, glycerol metabolism |
| aes | 3.9 | Up | Acetyl esterase, carboxylesterase activity |
| rffH | −2.2 | Down | Extracellular polysaccharide biosynthetic process |
| rffA | −2.2 | Down | Lipopolysaccharide biosynthetic process |
| arnA | 2.0 | Up | Decarboxylase, lipid biosynthetic process |