Gene

Fold expression

Regulation

Function

Oxidative damage response

oxyS

28.8

Up

Small regulatory RNA, responsive to oxidative stress

katG

19.3

Up

Catalase/hydrogen peroxidase

sodA

2.1

Up

Superoxide dismutase/detoxification of superoxide radicals

soxS

2.9

Up

Transcriptional regulator of oxidative stress

yhjA

2.0

Up

Cytochrome-C peroxidase activity

ahpF

7.0

Up

Disulfide oxidoreductase activity/peroxidase

ahpC

3.9

Up

Peroxidase activity/peroxiredoxin

ybiX

−2.4

Down

Fe(II)-dependent oxygenase, hydroxylase activity

SOS response

recN

2.4

Up

DNA recombination & repair

dinL

2.1

Up

DNA-damage-inducible protein

recD

2.3

Up

DNA repair, helicase activity, exonuclease V subunit

recB

2.1

Up

Exonuclease V subunit (recBCD complex)

nfo

4.4

Up

Endonuclease IV, DNA repair

Nitrosative stress

hda

−3.2

Down

DNA replication initiation factor

napA

−2.6

Down

Nitrate reductase, periplasmic

napD

−3.2

Down

Assembly protein for periplasmic nitrate reductase

napF

−3.5

Down

Ferredoxin-type protein, Fe-Fe binding, electron transport

Related to cell envelop

tsx

−2.5

Down

Porin activity, iron membrane-transporter

ynbA

2.2

Up

Inner membrane, phosphotransferase

yjcH

−2.2

Down

Inner membrane protein, DUF485 family

yagU

2.7

Up

Response to acidity, DUF1440 family

yliE

2.6

Up

Hydrolase activity, inner membrane protein

flgF

−2.0

Down

Flagellar/motility, flagellum basal body

ycfS

−3.5

Down

Peptidoglycan synthetase activity, cell shape

livJ

−2.8

Down

Carbon starvation induced gene, cell wall

Other stress-related response

sufA

2.4

Up

Response to oxidative stress, Fe-S cluster protein

acnA

2.2

Up

Aconitate hydratase/oxidative stress response/TCA cycle

uspD

5.1

Up

Response to stress, cytoplamic protein

cstA

−3.2

Down

Response to stress, plasma membrane protein