No. | Clinical sample | Medical diagnosis | Gene 16s | Gene 18s | Microbiological culture | Sanger sequencing | Clinical manifestations | SOFA |
1 | Bloodstream | Endocarditis | + | - | Staphylococcus aureus | Staphylococcus aureus | Fever, acute heart failure, dyspnea. | 10 |
2 | Bloodstream | Acute liver failure | + | - | Staphylococcus aureus | Staphylococcus aureus | Abdominal pain, fever, septic shock, jaundice, transamineemia, coagulopathy. | 9 |
3 | CSF | Acute meningitis | + | - | Staphylococcus aureus | Staphylococcus aureus | Headache, fever, seizures. | 5 |
4 | CSF | Acute meningitis | + | - | Negative | Pseudomonas putida | Headache, oral intolerance, fever, impaired state of consciousness. | 3 |
5 | Peritoneal fluid | Peritonitis | + | - | Negative | Salmonella enterica | Septic shock, abdominal pain, diarrhea, fever. | 9 |
6 | Bronchial aspirate | Community-acquired pneumonia | + | - | Candida spp. | Candida krusei | Septic shock, pleural effusion, fever, ARDS. | 8 |
7 | CSF | Acute meningitis | + | - | Cryptococcus spp. | Pseudomonas putida | Headache, oral intolerance, fever, and impaired state of consciousness. | 4 |
8 | Pleural effusion | Community-acquired pneumonia | - | + | Mixed microbiota | Aspergillus fumigatus | Septic shock, fever, pleural effusion, and ARDS. | 1 |
9 | Bronchial aspirate | Community-acquired pneumonia | - | + | Negative | Candida krusei | Pleural effusion, cough, dyspnea, and fever. | 0 |
10 | Pleural effusion | Post COVID syndrome | - | + | E. Coli BLEE | Aspergillus niger | Hemoptysis, fever, dyspnea, and cough. | 0 |
11 | Pleural effusion | Post COVID syndrome | - | + | Negative | Cryptococcus neoformans | Pleural effusion, fever, septic shock, and dyspnea. | 0 |
12 | Pleural effusion | Community-acquired pneumonia | - | + | Pseudomonas aeruginosa | Rhizopus oryzae | Septic shock, pleural effusion, dyspnea, and fever. | 8 |
13 | CSF | Acute meningitis | - | + | Negative | Aspergillus flavus | Ataxia, headache. | 5 |
14 | Pleural effusion | Community-acquired pneumonia | - | + | Acinetobacter spp./SARM | Candida krusei | Septic shock, pleural effusion, fever, ARDS. | 9 |
15 | Bloodstream | Pancytopenia | - | + | Negative | Candida krusei | Septic shock, fever, pancytopenia, coagulopathy. | 3 |
16 | Pleural effusion | Community-acquired pneumonia | - | + | Streptococcus pneumoniae | Candida krusei | Pleural effusion, cough, dyspnea, fever. | 3 |
17 | Pleural effusion | Community-acquired pneumonia | - | + | Negative | Cryptococcus neoformans | Pleural effusion, cough, fever, dyspnea. | 0 |
18 | CSF | Acute meningitis | - | + | Negative | Aspergillus flavus | Headache, oral intolerance, and impaired state of consciousness. | 6 |
19 | Bronchial aspirate | ARDS | - | + | Negative | Aspergillus flavus | Septic shock, pleural effusion, dyspnea. | 4 |
20 | Bronchial aspirate | ARDS | - | + | Negative | Leptotrichia shahii, Lichteimia spp. | Pleural effusion, fever, septic shock, and dyspnea. | 3 |
21 | Pleural effusion | Community-acquired pneumonia | + | + | Rhyzosporum | Aspergillus flavus, Klebsiella pneumoniae | Septic shock, cough, pleural effusion, fever | 4 |
22 | Biopsy | Adenomegaly | + | + | Negative | Talaromyces pinophilus, Klebsiella pneumoniae | Adenomegaly, dysphagia, intermittent fever. | 0 |
23 | Bloodstream | Septic arthritis | + | + | Staphylococcus aureus | Staphylococcus aureus, Aspergillus flavus | Septic shock, coagulopathy, fever, seizures, phlogosis. | 13 |
24 | Bloodstream | Urinary tract infection | + | + | Candida glabrata | Staphylococcus aureus, Aspergillus flavus | Fever, dysuria, pyuria. | 7 |
25 | Biopsy | Adenomegaly | + | + | Mixed microbiota | Phyllobacterium myrsinacearum, uncultured fungus sp. 5OPS3-3AITS1 | Adenomegaly, fever and dysphagia. | 0 |
26 | Bloodstream | Endocarditis | + | + | Staphylococcus aureus | Staphylococcus aureus, Aspergillus flavus | Fever, acute heart failure, dyspnea. | 5 |
27 | Bronchial aspirate | ARDS | + | + | Candida spp. | Delftia sp., Aspergillus flavus | Septic shock, dyspnea, ARDS. | 8 |
28 | Bronchial aspirate | ARDS | - | - | Candida spp. | Negative | Septic shock, dyspnea, pleural effusion, fever. | 2 |
29 | Bloodstream | Pancytopenia | - | - | Shigella spp. | Negative | Abdominal pain, fever, septic shock, jaundice, transamineemia, coagulopathy. | 9 |
30 | Bronchial aspirate | ARDS | - | - | Negative | Negative | Septic shock, pleural effusion, dyspnea, cough, fever | 0 |