SNP ID

Study

Case

Control

Risk

P-value (Fisher’s exact test)

Odds

11

12

22

MAF

11

12

22

MAF

allele

Allele

Genotype

Genotype

minimum

ratio

1 vs 2

11 vs 12 + 22

22 vs 11 + 12

rs267950

[T/C]a

GWAS

150

197

49

0.372

236

187

34

0.279

C

4.05E−05

6.25E−05

2.01E−02

4.05E−05

1.75

Chr 5

Replication

161

168

66

0.380

385

329

82

0.310

C

7.44E−04

1.36E−02

2.03E−03

7.44E−04

1.36

Positionb

Combined

311

365

115

0.376

621

516

116

0.298

C

3.43E−07

6.29E−06

3.21E−04

3.43E−07

1.52

10796433

Gene DPA

Meta-analysisc

1.48E−07

1.44

rs954406

[C/A]a

GWAS

174

190

32

0.321

269

161

27

0.235

A

8.93E−05

1.48E−05

2.25E−01

1.48E−05

1.83

Chr 10

Replication

175

178

35

0.320

435

302

49

0.254

A

1.01E−03

1.00E−03

9.18E−02

1.00E−03

1.51

Positionb

Combined

349

368

67

0.320

704

463

76

0.247

A

5.16E−07

1.16E−07

4.06E−02

1.16E−07

1.63

82617594

Gene LOC647532

Meta-analysisc

3.97E−07

1.44