SNP ID | Study | Case | Control | Risk | P-value (Fisher’s exact test) | Odds | |||||||||
11 | 12 | 22 | MAF | 11 | 12 | 22 | MAF | allele | Allele | Genotype | Genotype | minimum | ratio | ||
1 vs 2 | 11 vs 12 + 22 | 22 vs 11 + 12 | |||||||||||||
rs267950 [T/C]a | GWAS | 150 | 197 | 49 | 0.372 | 236 | 187 | 34 | 0.279 | C | 4.05E−05 | 6.25E−05 | 2.01E−02 | 4.05E−05 | 1.75 |
Chr 5 | Replication | 161 | 168 | 66 | 0.380 | 385 | 329 | 82 | 0.310 | C | 7.44E−04 | 1.36E−02 | 2.03E−03 | 7.44E−04 | 1.36 |
Positionb | Combined | 311 | 365 | 115 | 0.376 | 621 | 516 | 116 | 0.298 | C | 3.43E−07 | 6.29E−06 | 3.21E−04 | 3.43E−07 | 1.52 |
10796433 Gene DPA | Meta-analysisc | 1.48E−07 | 1.44 | ||||||||||||
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rs954406 [C/A]a | GWAS | 174 | 190 | 32 | 0.321 | 269 | 161 | 27 | 0.235 | A | 8.93E−05 | 1.48E−05 | 2.25E−01 | 1.48E−05 | 1.83 |
Chr 10 | Replication | 175 | 178 | 35 | 0.320 | 435 | 302 | 49 | 0.254 | A | 1.01E−03 | 1.00E−03 | 9.18E−02 | 1.00E−03 | 1.51 |
Positionb | Combined | 349 | 368 | 67 | 0.320 | 704 | 463 | 76 | 0.247 | A | 5.16E−07 | 1.16E−07 | 4.06E−02 | 1.16E−07 | 1.63 |
82617594 Gene LOC647532 | Meta-analysisc | 3.97E−07 | 1.44 |