Chr | Cytoband | Start | Length (bps) | Modification | No. probes | Probe density | Mean copy number | P-value | Overlapping RefSeq genes |
1 | 1p13.2 | 113149267 | 334135 | Deletion | 10 | 33413.5 | 1.15 | 0.0265239 | AKR7A2P1 (+), CAPZA1 (+), FAM19A3 (+), LINC01356 (--−), MOV10 (+), PPM1J (--−), RHOC (--−), overlaps with 3.8% of ST7L (--−), 8.7% of SLC16A1 (--−) |
1 | 1p32.3 | 55715510 | 51613 | Deletion | 10 | 5161.3 | 1.15 | 0.0367101 | None |
1 | 1p34.3 | 37798637 | 102638 | Deletion | 13 | 7895.23 | 1.13 | 0.0182391 | None |
1 | 1p36.31 | 7026742 | 116873 | Deletion | 15 | 7791.53 | 1.08 | 0.00344254 | Intron of CAMTA1 (+) |
1 | 1q25.3 | 183887132 | 80445 | Deletion | 10 | 8044.5 | 1.13 | 0.0335717 | Overlaps with 13.1% of RGL1 (+), 77.8% of COLGALT2 (--−), 85.5% of COLGALT2 (--−) |
1 | 1q42.3 | 235738664 | 66894 | Deletion | 10 | 6689.4 | 1.12 | 0.0261786 | Contained within GNG4 (--−), intron of MIR5096 (+) |
3 | 3p21.2 | 50613135 | 75050 | Deletion | 11 | 6822.73 | 1.08 | 0.0362439 | CISH (--−), MAPKAPK3 (+), overlaps with 12.4% of HEMK1 (+) |
3 | 3p26.1--−3p25.3 | 8673792 | 92304 | Deletion | 15 | 6153.6 | 1.10 | 0.0152087 | Overlaps with 13.8% of SSUH2 (--−), overlaps with 21.6% of SSUH2 (--−) |
4 | 4p15.33 | 14137469 | 96728 | Deletion | 14 | 6909.14 | 1.24 | 0.044563 | Overlaps with 4.4% of LINC01085 (+) |
4 | 4p16.1 | 6278847 | 93121 | Deletion | 15 | 6208.07 | 1.09 | 0.00116679 | Overlaps with 28.1% of WFS1 (+), 53.3% of PPP2R2C (--−) |
4 | 4p16.1 | 7195569 | 215250 | Deletion | 36 | 5979.17 | 1.42 | 0.0296499 | MIR4798 (+), contained within SORCS2 (+) |
4 | 4q31.21 | 142272873 | 75935 | Deletion | 10 | 7593.5 | 1.12 | 0.031538 | None |
5 | 5q31.3 | 141202169 | 87032 | Deletion | 10 | 8703.2 | 1.11 | 0.0426613 | LOC729080 (--−), PCDH1 (--−) |
5 | 5q34 | 167609806 | 65536 | Deletion | 12 | 5461.33 | 1.16 | 0.0457192 | CTB--−178M22.2 (--−), contained within TENM2 (+) |
6 | 6p21.33 | 30879434 | 64559 | Deletion | 11 | 5869 | 1.12 | 0.0269568 | DPCR1 (+), SFTA2 (--−), VARS2 (+), overlaps with 3.8% of GTF2H4 (+) |
6 | 6p22.3 | 22409457 | 107794 | Deletion | 12 | 8982.83 | 1.03 | 0.0162862 | None |
7 | 7q34 | 141967486 | 76479 | Deletion | 11 | 6952.64 | 1.17 | 0.0127401 | TRY2P (--−) |
9 | 9q22.33 | 101270040 | 25344 | Deletion | 11 | 2304 | 1.04 | 0.0017989 | Intron of GABBR2 (--−) |
10 | 10q21.2 | 61551896 | 92406 | Deletion | 10 | 9240.6 | 1.15 | 0.025666 | Contained within CCDC6 (--−) |
10 | 10q24.2 | 100002312 | 87903 | Deletion | 16 | 5493.94 | 1.20 | 0.0347213 | LOXL4 (--−), overlaps with 2.7% of R3HCC1L (+) |
10 | 10q25.3 | 115707335 | 28808 | Deletion | 13 | 2216 | 1.18 | 0.0195345 | None |
10 | 10q26.13 | 125132158 | 62373 | Deletion | 13 | 4797.92 | 1.04 | 0.0102152 | None |
11 | 11q23.3 | 120669928 | 92134 | Deletion | 14 | 6581 | 1.12 | 0.00354705 | Contained within GRIK4 (+) |
11 | 11q23.3 | 119599042 | 89466 | Deletion | 18 | 4970.33 | 1.22 | 0.0038485 | LOC102724301 (+), overlaps with 0.4% of PVRL1 (--−) |
12 | 12q13.11 | 48015131 | 111819 | Deletion | 12 | 9318.25 | 1.07 | 0.016288 | ENDOU (--−), RPAP3 (--−) |
13 | 13q12.12 | 24611705 | 44375 | Deletion | 10 | 4437.5 | 1.00 | 0.0351841 | Intron of SPATA13 (+) |
15 | 15q12 | 25853693 | 66972 | Deletion | 11 | 6088.36 | 1.18 | 0.0299143 | None |
15 | 15q25.3 | 87956746 | 68507 | Deletion | 10 | 6850.7 | 1.05 | 0.0299816 | None |
17 | 17p13.3 | 2745992 | 94868 | Deletion | 10 | 9486.8 | 1.07 | 0.0462259 | Contained within RAP1GAP2 (+) |
17 | 17q24.2 | 64942795 | 82532 | Deletion | 10 | 8253.2 | 1.11 | 0.00412681 | Overlaps with 77.9% of CACNG4 (+) |
20 | 20q13.13 | 49051633 | 94734 | Deletion | 13 | 7287.23 | 1.16 | 0.0270251 | Overlaps with 20.6% of PTPN1 (+) |
21 | 21q22.3 | 43428563 | 50173 | Deletion | 10 | 5017.3 | 0.99 | 0.0120412 | ZNF295--−AS1 (+), overlaps with 3.9% of ZBTB21 (--−) |