Chr

Cytoband

Start

Length (bps)

Modification

No. probes

Probe density

Mean copy number

P-value

Overlapping RefSeq genes

1

1p13.2

113149267

334135

Deletion

10

33413.5

1.15

0.0265239

AKR7A2P1 (+), CAPZA1 (+), FAM19A3 (+), LINC01356 (--−), MOV10 (+), PPM1J (--−), RHOC (--−), overlaps with 3.8% of ST7L (--−), 8.7% of SLC16A1 (--−)

1

1p32.3

55715510

51613

Deletion

10

5161.3

1.15

0.0367101

None

1

1p34.3

37798637

102638

Deletion

13

7895.23

1.13

0.0182391

None

1

1p36.31

7026742

116873

Deletion

15

7791.53

1.08

0.00344254

Intron of CAMTA1 (+)

1

1q25.3

183887132

80445

Deletion

10

8044.5

1.13

0.0335717

Overlaps with 13.1% of RGL1 (+), 77.8% of COLGALT2 (--−), 85.5% of COLGALT2 (--−)

1

1q42.3

235738664

66894

Deletion

10

6689.4

1.12

0.0261786

Contained within GNG4 (--−), intron of MIR5096 (+)

3

3p21.2

50613135

75050

Deletion

11

6822.73

1.08

0.0362439

CISH (--−), MAPKAPK3 (+), overlaps with 12.4% of HEMK1 (+)

3

3p26.1--−3p25.3

8673792

92304

Deletion

15

6153.6

1.10

0.0152087

Overlaps with 13.8% of SSUH2 (--−), overlaps with 21.6% of SSUH2 (--−)

4

4p15.33

14137469

96728

Deletion

14

6909.14

1.24

0.044563

Overlaps with 4.4% of LINC01085 (+)

4

4p16.1

6278847

93121

Deletion

15

6208.07

1.09

0.00116679

Overlaps with 28.1% of WFS1 (+), 53.3% of PPP2R2C (--−)

4

4p16.1

7195569

215250

Deletion

36

5979.17

1.42

0.0296499

MIR4798 (+), contained within SORCS2 (+)

4

4q31.21

142272873

75935

Deletion

10

7593.5

1.12

0.031538

None

5

5q31.3

141202169

87032

Deletion

10

8703.2

1.11

0.0426613

LOC729080 (--−), PCDH1 (--−)

5

5q34

167609806

65536

Deletion

12

5461.33

1.16

0.0457192

CTB--−178M22.2 (--−), contained within TENM2 (+)

6

6p21.33

30879434

64559

Deletion

11

5869

1.12

0.0269568

DPCR1 (+), SFTA2 (--−), VARS2 (+), overlaps with 3.8% of GTF2H4 (+)

6

6p22.3

22409457

107794

Deletion

12

8982.83

1.03

0.0162862

None

7

7q34

141967486

76479

Deletion

11

6952.64

1.17

0.0127401

TRY2P (--−)

9

9q22.33

101270040

25344

Deletion

11

2304

1.04

0.0017989

Intron of GABBR2 (--−)

10

10q21.2

61551896

92406

Deletion

10

9240.6

1.15

0.025666

Contained within CCDC6 (--−)

10

10q24.2

100002312

87903

Deletion

16

5493.94

1.20

0.0347213

LOXL4 (--−), overlaps with 2.7% of R3HCC1L (+)

10

10q25.3

115707335

28808

Deletion

13

2216

1.18

0.0195345

None

10

10q26.13

125132158

62373

Deletion

13

4797.92

1.04

0.0102152

None

11

11q23.3

120669928

92134

Deletion

14

6581

1.12

0.00354705

Contained within GRIK4 (+)

11

11q23.3

119599042

89466

Deletion

18

4970.33

1.22

0.0038485

LOC102724301 (+), overlaps with 0.4% of PVRL1 (--−)

12

12q13.11

48015131

111819

Deletion

12

9318.25

1.07

0.016288

ENDOU (--−), RPAP3 (--−)

13

13q12.12

24611705

44375

Deletion

10

4437.5

1.00

0.0351841

Intron of SPATA13 (+)

15

15q12

25853693

66972

Deletion

11

6088.36

1.18

0.0299143

None

15

15q25.3

87956746

68507

Deletion

10

6850.7

1.05

0.0299816

None

17

17p13.3

2745992

94868

Deletion

10

9486.8

1.07

0.0462259

Contained within RAP1GAP2 (+)

17

17q24.2

64942795

82532

Deletion

10

8253.2

1.11

0.00412681

Overlaps with 77.9% of CACNG4 (+)

20

20q13.13

49051633

94734

Deletion

13

7287.23

1.16

0.0270251

Overlaps with 20.6% of PTPN1 (+)

21

21q22.3

43428563

50173

Deletion

10

5017.3

0.99

0.0120412

ZNF295--−AS1 (+), overlaps with 3.9% of ZBTB21 (--−)