Chr | Cytoband | Start | End | Length (bps) | Length (Kb) | Modification | No. probes | Probe density | Mean copy number | P-value | Overlapping RefSeq genes |
1 | 1p32.2 | 58018411 | 58102775 | 84364 | 84 | Amplification | 13 | 6489.54 | 3.04943 | 0.00180806 | Intron of DAB1 (--−) |
2 | 2p21 | 47182709 | 47259414 | 76705 | 77 | Deletion | 11 | 6973.18 | 1.17658 | 0.00445066 | Contained within TTC7A (+) |
2 | 2p25.1 | 9784529 | 9857416 | 72887 | 73 | Deletion | 10 | 7288.7 | 1.18714 | 0.000653079 | None |
2 | 2q14.2 | 119893616 | 120103405 | 209789 | 210 | Deletion | 26 | 8068.81 | 1.35894 | 0.00581587 | C1QL2 (--−), STEAP3 (+), region overlaps with 20.78% of C2orf76 (--−) |
3 | 3p26.1 | 6394113 | 6490483 | 96370 | 96 | Deletion | 14 | 6883.57 | 1.30877 | 0.0468727 | None |
4 | 4q23 | 100164895 | 100319304 | 154409 | 154 | Deletion | 12 | 12867.4 | 1.37538 | 0.0193024 | ADH1A (--−), ADH1B (--−), ADH1C (--−), region overlaps with 37.3% of LOC100507053 (+) |
5 | 5q31.1 | 131646277 | 131969143 | 322866 | 323 | Deletion | 27 | 11958 | 1.37316 | 0.00514616 | C5orf56 (+), IL5 (--−), IRF1 (--−), LOC553103 (--−), MIR3936 (--−), SLC22A5 (+), region overlaps with 10.4% of SLC22A4 (+), 23.7% of RAD50 (+) |
5 | 5q33.1 | 150982753 | 151040778 | 58025 | 58 | Deletion | 10 | 5802.5 | 1.18605 | 0.00123703 | Region overlaps with 0.2% of SPARC (--−) |
6 | 6p12.1 | 53226579 | 53361010 | 134431 | 134 | Deletion | 13 | 10340.8 | 1.2829 | 0.0113972 | None |
6 | 6p25.1 | 6598746 | 6665270 | 66524 | 67 | Deletion | 14 | 4751.71 | 1.27237 | 0.0131841 | Region overlaps with 36.6% of LY86--−AS1 (--−), 84.9% of LY86 (+) |
7 | 7p13 | 44783038 | 45237489 | 454451 | 454 | Deletion | 39 | 11652.6 | 1.46163 | 0.0140781 | CCM2 (+), H2AFV (--−), MIR4657 (--−), MYO1G (--−), NACAD (--−), PPIA (+), PURB (--−), RAMP3 (+), SNHG15 (--−), SNORA5A (--−), SNORA5B (--−), SNORA5C (--−), SNORA9 (--−), TBRG4 (--−), ZMIZ2 (+) |
7 | 7q35 | 145066826 | 145882546 | 815720 | 816 | Amplification | 27 | 30211.9 | 2.91072 | 2.99E--−05 | Region overlaps with 8.5% of CNTNAP2 (+) |
10 | 10q22.1 | 72660683 | 73858777 | 1198094 | 1198 | Deletion | 184 | 6511.38 | 1.58835 | 0.00311729 | C10orf105 (--−), C10orf54 (--−), CDH23 (+), CHST3 (+), LOC102723377 (--−), MIR7152 (+), PSAP (--−), SLC29A3 (+), SPOCK2 (--−), UNC5B (+), UNC5B--−AS1 (--−), region overlaps with 0.2% of ASCC1 (--−) |
11 | 11p15.1 | 19576970 | 19620319 | 43349 | 43 | Deletion | 10 | 4334.9 | 1.19839 | 0.000673858 | MIR4486 (+), intron of NAV2 (+) |
13 | 13q14.11 | 40883885 | 40954431 | 70546 | 71 | Deletion | 10 | 7054.6 | 1.21126 | 0.0203006 | Region overlaps with 47.0% of LINC00598 (--−) |
16 | 16p13.3 | 86671 | 2372535 | 2285864 | 2286 | Deletion | 131 | 17449.3 | 1.55843 | 0.00107079 | ARHGDIG (+), AXIN1 (--−), BAIAP3 (+), BRICD5 (--−), C16orf13 (--−), C16orf91 (--−), C1QTNF8 (--−), CACNA1H (+), CAPN15 (+), CASKIN1 (--−), CCDC154 (--−), CCDC78 (--−), CHTF18 (+), CLCN7 (--−), CRAMP1L (+), DECR2 (+), DNASE1L2 (+), E4F1 (+), ECI1 (--−), EME2 (+), FAHD1 (+), FAM173A (+), FAM195A (+), FBXL16 (--−), GFER (+), GNG13 (--−), GNPTG (+), HAGH (--−), HAGHL (+), HBA1 (+), HBA2 (+), HBM (+), HBQ1 (+), HBZ (+), HN1L (+), HS3ST6 (--−), IFT140 (--−), IGFALS (--−, ITFG3 (+), JMJD8 (--−), LINC00235 (--−), LINC00254 (--−), LMF1 (--−), |
LMF1--−AS1 (+), LOC100134368 (+), LUC7L (--−), MAPK8IP3 (+), MEIOB (--−), METRN (+), MIR1225 (--−), MIR3176 (+), MIR3177 (+), MIR3180--−5 (--−), MIR3677 (+), MIR4516 (+), MIR4717 (+), MIR5587 (+), MIR6511B1 (--−), MIR6511B2 (--−), MIR662 (+), MIR940 (+), MLST8 (+), MPG (+), MRPL28 (--−), MRPS34 (--−), MSLN (+), MSRB1 (--−), NARFL (--−), NDUFB10 (+), NHLRC4 (+), NME3 (--−), NME4 (+), NOXO1 (--−), NPRL3 (--−), NPW (+), NTHL1 (--−), NUBP2 (+), PDIA2 (+), PGP (-−), PIGQ (+), PKD1 (--−), POLR3K (-−), PRR25 (+), PRR35 (+), PTX4 (--−), RAB11FIP3 (+), RAB26 (+), RAB40C (+), RGS11 (--−), RHBDF1 (--−), RHBDL1 (+), RHOT2 (+), RNF151 (+), RNPS1 (--−), RPL3L (--−), RPS2 (--−), RPUSD1 (--−), SLC9A3R2 (+), SNHG9 (+), SNORA10 (--−), SNORA64 (--−), SNORA78 (+), SNORD60 (--−), SNRNP25 (+), SOX8 (+), SPSB3 (--−), SSTR5 (+), SSTR5--−AS1 (--−), STUB1 (+), SYNGR3 (+), TBL3 (+), TELO2 (+), TMEM204 (+), TMEM8A (--−), TPSAB1 (+), TPSB2 (--−), TPSD1 (+), TPSG1 (--−), TRAF7 (+), TSC2 (+), TSR3 (--−), UBE2I (+), UNKL (--−), WDR24 (--−), WDR90 (+), WFIKKN1 (+), ZNF598 (--−), region overlaps with 2.0% of ABCA3 (--−) | |||||||||||
16 | 16q22.1 | 68713776 | 68766540 | 52764 | 53 | Deletion | 10 | 5276.4 | 1.18734 | 0.0108732 | Region overlaps with 36.4% of CDH3 (+) |
16 | 16q24.3 | 88856351 | 90156776 | 1300425 | 1300 | Deletion | 95 | 13688.7 | 1.53951 | 0.00253683 | ACSF3 (+), AFG3L1P (+), ANKRD11 (--−), APRT (--−), CBFA2T3 (--−), CDH15 (+), CDK10 (+), CDT1 (+), CENPBD1 (--−), CHMP1A (--−), CPNE7 (+), DBNDD1 (--−), DEF8 (+), DPEP1 (+), FANCA (--−), GALNS (--−), GAS8 (+), GAS8--−AS1 (--−), LINC00304 (+), LOC100129697 (+), LOC100287036 (+), LOC101927817 (+), LOC400558 (+), MC1R (+), PABPN1L (--−), PRDM7 (--−), RPL13 (+), SLC22A31 (--−), SNORD68 (+), SPATA2L (--−), SPATA33 (+), SPG7 (+), SPIRE2 (+), TCF25 (+), TRAPPC2L (+), TUBB3 (+), URAHP (--−), VPS9D1 (--−), VPS9D1--−AS1 (+), ZNF276 (+), ZNF778 (+) |
17 | 17q21.31 | 44120955 | 44267657 | 146702 | 147 | Amplification | 27 | 5433.41 | 2.66323 | 0.0147722 | Contained within KANSL1 (--−) |
17 | 17q21.33--− 17q22 | 50041539 | 52770545 | 2729006 | 2729 | Amplification | 175 | 15594.3 | 2.42975 | 0.0147755 | C17orf112 (+), KIF2B (+), region overlaps with 7.1% of CA10 (--−), 7.2% of CA10 (--−), 7.2% of CA10 (--−) |
20 | 20q12 | 40524911 | 40574279 | 49368 | 49 | Amplification | 10 | 4936.8 | 3.22544 | 0.000732926 | None |
20 | 20q13.32 | 58180686 | 58302046 | 121360 | 121 | Amplification | 10 | 12136 | 3.15384 | 0.00611637 | LOC100506384 (--−), intron of PHACTR3 (+), region overlaps with 4.8% of PHACTR3 (+), 41.5% of PHACTR3 (+), 81.1% of PHACTR3 (+) |
21 | 21q22.2 | 39949569 | 40032072 | 82503 | 83 | Deletion | 10 | 8250.3 | 1.18693 | 0.0143156 | Contained within ERG (--−), region overlaps with 8.9% of ERG (--−) |
21 | 21q22.3 | 43461765 | 43534781 | 73016 | 73 | Deletion | 10 | 7301.6 | 0.937121 | 0.0138014 | UMODL1--−AS1 (--−), region overlaps with 59.4% of UMODL1 (+), 70.8% of UMODL1 (+) |
22 | 22q12.3 | 34634252 | 34899238 | 264986 | 265 | Amplification | 34 | 7793.71 | 2.61709 | 0.00171403 | None |